Supplemental material for the book chapter "Depicting gene co-expression networks underlying eQTLs"

This page contains Supplemental material for the book chapter “Depicting gene co-expression networks underlying eQTLs” (Nathalie Villa-Vialaneix, Laurence Liaubet & Magali San Cristobal):

• the data (as a tar.gz file that has to be uncompressed in your working directory), bionet_data.tar.gz, which contains two directories: data with the file subsetEQTL.csv (gene expression) and results with different intermediate results obtained during the statistical analysis (lcc.graphml is the analyzed network, in graphml format, clustering.txt is the final clustering which is analyzed in the chapter, modularities.rda is the maximum modularities of the 100 random graphs generated as described in Section 4.4 of the chapter and clustX.graphml are subgraphs corresponding to the 5 clusters);
• the complete R script for the analysis bionet_analysis.R with the additionnal script tools.R.

Book page